DNAbin-class

DNAbinOrNULL

DNAbinOrNULL-class

phylo-class

multiPhylo-class

multiPhyloOrNULL

multiPhyloOrNULL-class

characterOrNULL

characterOrNULL-class

numericOrNULL

numericOrNULL-class

factorNULL

factorNULL-class

integerOrNULL

integerOrNULL-class

matrixOrNULL

matrixOrNULL-class

data.frameOrNULL

data.frameOrNULL-class

listOrNULL

listOrNULL-class

DateOrNULL

DateOrNULL-class

POSIXctOrNULL

POSIXctOrNULL-class

<p>These formal (S4) classes are defined for internal use in
  <code>OutbreakTools</code>. They include unions of existing classes with the type
  <code>NULL</code>, and conversion of existing S3 classes into S4.</p>

classes

auxiliary classes

Implements basic tools for storing, handling and visualizing disease outbreak data, as well as simple analysis tools. OutbreakTools defines the new formal class obkData which can be used to store any case-base outbreak data, and provides summaries for these objects, alongside a range of functions for subsetting and data manipulation. It implements a range of graphics for visualising timelines, maps, contact networks and genetic analyses. It also includes a simple case-base outbreak simulation tool.

auxiliary classes: Auxiliary classes for OutbreakTools

Description

Arguments